added tempdefault to set.dir and fixed bug with padding type in sffinfo.

[mothur.git] / sffinfocommand.cpp

diff --git a/sffinfocommand.cpp b/sffinfocommand.cpp
index 07334f656d3aaff14c653a14a38d1e0eac38bba9..01338ca34be42556131b15a0ead73c0ef9952858 100644 (file)
--- a/sffinfocommand.cpp
+++ b/sffinfocommand.cpp
@@ -363,8 +363,8 @@ int SffInfoCommand::readCommonHeader(ifstream& in, CommonHeader& header){
                        if (header.keySequence.length() > header.keyLength) { header.keySequence = header.keySequence.substr(0, header.keyLength);  }
                                
                        /* Pad to 8 chars */
-                       int spotInFile = in.tellg();
-                       int spot = (spotInFile + 7)& ~7;  // ~ inverts
+                       unsigned long int spotInFile = in.tellg();
+                       unsigned long int spot = (spotInFile + 7)& ~7;  // ~ inverts
                        in.seekg(spot);
                        
                }else{
@@ -426,8 +426,8 @@ int SffInfoCommand::readHeader(ifstream& in, Header& header){
                        if (header.name.length() > header.nameLength) { header.name = header.name.substr(0, header.nameLength);  }
                        
                        /* Pad to 8 chars */
-                       int spotInFile = in.tellg();
-                       int spot = (spotInFile + 7)& ~7;
+                       unsigned long int spotInFile = in.tellg();
+                       unsigned long int spot = (spotInFile + 7)& ~7;
                        in.seekg(spot);
                        
                }else{
@@ -478,8 +478,8 @@ int SffInfoCommand::readSeqData(ifstream& in, seqRead& read, int numFlowReads, i
                        }
                
                        /* Pad to 8 chars */
-                       int spotInFile = in.tellg();
-                       int spot = (spotInFile + 7)& ~7;
+                       unsigned long int spotInFile = in.tellg();
+                       unsigned long int spot = (spotInFile + 7)& ~7;
                        in.seekg(spot);
                        
                }else{