added parameter to chimera.uchime

[mothur.git] / sfasta.cpp

diff --git a/sfasta.cpp b/sfasta.cpp
index 5e794c67d5f5369df91f347e0a45b9365cb34ca0..95590404d57f43b94ed1c18a9d714cfed2bb11f7 100644 (file)
--- a/sfasta.cpp
+++ b/sfasta.cpp
@@ -1,3 +1,5 @@
+//uchime by Robert C. Edgar http://drive5.com/uchime This code is donated to the public domain.\r
+\r
 #include "sfasta.h"\r
 #include "orf.h"\r
 #include "alpha.h"\r
@@ -225,8 +227,9 @@ const byte *SFasta::GetNextSeqLo()
                        if (!WarningDone)\r
                                {\r
                                if (isgap(c))\r
-                                       Warning("Ignoring gaps in FASTA file '%s'",\r
-                                               m_FileName.c_str());\r
+                                       //Warning("Ignoring gaps in FASTA file '%s'",\r
+                                               //m_FileName.c_str());\r
+                                       ;\r
                                else if (isprint(c))\r
                                        Warning("Invalid FASTA file '%s', non-letter '%c' in sequence >%s",\r
                                          m_FileName.c_str(), c, Label);\r