fixes while testing 1.33.0

[mothur.git] / setdircommand.h

diff --git a/setdircommand.h b/setdircommand.h
index 9afc4ea6579d68019dfe04c56aab7119b78d656a..36753edeb57f8601dd0a1f5309b9c1cf67109429 100644 (file)
--- a/setdircommand.h
+++ b/setdircommand.h
@@ -25,7 +25,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "set.dir";             }
        string getCommandCategory()             { return "General";             }
+       
        string getHelpString(); 
+    string getOutputPattern(string){ return ""; }      
        string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
        string getDescription()         { return "set input, output and default directories"; }
 
@@ -35,7 +37,7 @@ public:
 private:
        CommandFactory* commandFactory;
        string output, input, tempdefault;
-       bool abort, debugOnly;
+       bool abort, debugOnly, modifyNames;
        vector<string> outputNames;