+++ /dev/null
-#ifndef SETDIRCOMMAND_H
-#define SETDIRCOMMAND_H
-
-/*
- * setoutdircommand.h
- * Mothur
- *
- * Created by westcott on 1/21/10.
- * Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "commandfactory.hpp"
-
-/**********************************************************/
-
-class SetDirectoryCommand : public Command {
-
-public:
- SetDirectoryCommand(string);
- SetDirectoryCommand() { abort = true; calledHelp = true; setParameters(); }
- ~SetDirectoryCommand(){}
-
- vector<string> setParameters();
- string getCommandName() { return "set.dir"; }
- string getCommandCategory() { return "General"; }
- string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
- string getDescription() { return "set input, output and default directories"; }
-
- int execute();
- void help() { m->mothurOut(getHelpString()); }
-
-private:
- CommandFactory* commandFactory;
- string output, input, tempdefault;
- bool abort;
- vector<string> outputNames;
-
-
-};
-
-/**********************************************************/
-
-#endif
-