moved utilities out of mothur.h and into mothurOut class.

[mothur.git] / setdircommand.cpp

diff --git a/setdircommand.cpp b/setdircommand.cpp
index 043c0acc8ec524c1b510da28c36c149d300f215a..a9ae730fba554945fb737c08b0f4cc739af5bec8 100644 (file)
--- a/setdircommand.cpp
+++ b/setdircommand.cpp
@@ -106,7 +106,7 @@ int SetDirectoryCommand::execute(){
                        #endif
                        
                        //test to make sure directory exists
-                       output = getFullPathName(output);
+                       output = m->getFullPathName(output);
                        string outTemp = output + "temp";
                        ofstream out;
                        out.open(outTemp.c_str(), ios::trunc);
@@ -139,7 +139,7 @@ int SetDirectoryCommand::execute(){
                        #endif
                        
                        //test to make sure directory exists
-                       input = getFullPathName(input);
+                       input = m->getFullPathName(input);
                        string inTemp = input + "temp";
                        ofstream in;
                        in.open(inTemp.c_str(), ios::trunc);