added countable class to read and store count file. added count parameter to make...

[mothur.git] / setcurrentcommand.h

diff --git a/setcurrentcommand.h b/setcurrentcommand.h
index 0033ed58cf25a274e9e4bbe2a17aa4e4cb298ef0..becc4d4712bba2257018378424e4f555e1a6f42a 100644 (file)
--- a/setcurrentcommand.h
+++ b/setcurrentcommand.h
@@ -23,6 +23,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "set.current"; }
        string getCommandCategory()             { return "General";             }
+       string getOutputFileNameTag(string, string) { return ""; }
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
        string getDescription()         { return "set current files for mothur"; }
@@ -38,7 +39,7 @@ private:
        string clearTypes;
        vector<string> types;
        
-       string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile;
+       string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile;
        string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;