removed read.dist, read.otu, read.tree and globaldata. added current to defaults...

[mothur.git] / setcurrentcommand.h

diff --git a/setcurrentcommand.h b/setcurrentcommand.h
index 98033b7b8d8bb4f1e68c5b62df4ddd97e239a35e..5a40e4a20f97377e86d973c2412cc17e12e3fcb0 100644 (file)
--- a/setcurrentcommand.h
+++ b/setcurrentcommand.h
@@ -18,18 +18,19 @@ class SetCurrentCommand : public Command {
 public:
        SetCurrentCommand(string);
        SetCurrentCommand();
-       ~SetCurrentCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help();
+       ~SetCurrentCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "set.current"; }
+       string getCommandCategory()             { return "General";             }
+       string getHelpString(); 
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
 private:
        
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
        bool abort;
        
        string clearTypes;