moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / setcurrentcommand.h

diff --git a/setcurrentcommand.h b/setcurrentcommand.h
deleted file mode 100644 (file)
index 3949519..0000000
--- a/setcurrentcommand.h
+++ /dev/null
@@ -1,49 +0,0 @@
-#ifndef SETCURRENTCOMMAND_H
-#define SETCURRENTCOMMAND_H
-
-/*
- *  setcurrentcommand.h
- *  Mothur
- *
- *  Created by westcott on 3/16/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-
-class SetCurrentCommand : public Command {
-       
-public:
-       SetCurrentCommand(string);
-       SetCurrentCommand();
-       ~SetCurrentCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "set.current"; }
-       string getCommandCategory()             { return "General";             }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
-       string getDescription()         { return "set current files for mothur"; }
-
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       
-       vector<string> outputNames;
-       bool abort;
-       
-       string clearTypes;
-       vector<string> types;
-       
-       string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile;
-       string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;
-
-       
-};
-
-#endif
-
-