changing command name classify.shared to classifyrf.shared

[mothur.git] / sequenceparser.cpp

diff --git a/sequenceparser.cpp b/sequenceparser.cpp
index 2aff07ebad9eb0b642a17d59289704b2c85ec9ac..37891eb44a0b42c2b9f0879dfd084da1893c289b 100644 (file)
--- a/sequenceparser.cpp
+++ b/sequenceparser.cpp
@@ -310,8 +310,6 @@ vector<string> SequenceParser::getNamesOfGroups(){ return groupMap->getNamesOfGr
 /************************************************************/
 bool SequenceParser::isValidGroup(string g){ return groupMap->isValidGroup(g); }
 /************************************************************/
-string SequenceParser::getGroup(string g){ return groupMap->getGroup(g); }
-/************************************************************/
 int SequenceParser::getNumSeqs(string g){ 
        try {
                map<string, vector<Sequence> >::iterator it;
@@ -402,7 +400,7 @@ int SequenceParser::getSeqs(string g, string filename, bool uchimeFormat=false){
                                        
                                        if(m->control_pressed) { out.close(); m->mothurRemove(filename); return 1; }
                                        
-                                       out << ">" << nameVector[i].name  << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl;
+                                       out << ">" <<  nameVector[i].name << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl; //
                                }
                                
                        }else {