working on pam

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index 312e49dcce47e7373b782a110030b46a9617be0a..c49899411f2dd7919d96ce9b9840c30b2b0dfcac 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -48,6 +48,7 @@ public:
        string getPairwise();
        string getUnaligned();
        string getInlineSeq();
+    int getNumNs();
        int getNumBases();
        int getStartPos();
        int getEndPos();
@@ -75,6 +76,7 @@ private:
        string unaligned;
        string aligned;
        string pairwise;
+    string comment;
        int numBases;
        int alignmentLength;
        bool isAligned;