finished shhh.seqs command, fixed bug with remove.groups and get.groups that caused...

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index b4337405a811545d4c3b2f64dc8771d42898d1fc..6a50cb0b8aa31e4a3a3b6c9c97e77416f53eeeb1 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -14,6 +14,9 @@
  *
  */
 
+
+//Data Structure for a fasta file.
+
 #include "mothur.h"
 #include "mothurout.h"
 
@@ -62,9 +65,9 @@ public:
 private:
        MothurOut* m;
        void initialize();
-       string getSequenceString(ifstream&);
+       string getSequenceString(ifstream&, int&);
        string getCommentString(ifstream&);
-       string getSequenceString(istringstream&);
+       string getSequenceString(istringstream&, int&);
        string getCommentString(istringstream&);
        string name;
        string unaligned;