finished shhh.seqs command, fixed bug with remove.groups and get.groups that caused...

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index 224ae5d7a7452172c3aa3be1e63906e0a876efe2..6a50cb0b8aa31e4a3a3b6c9c97e77416f53eeeb1 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -65,9 +65,9 @@ public:
 private:
        MothurOut* m;
        void initialize();
-       string getSequenceString(ifstream&);
+       string getSequenceString(ifstream&, int&);
        string getCommentString(ifstream&);
-       string getSequenceString(istringstream&);
+       string getSequenceString(istringstream&, int&);
        string getCommentString(istringstream&);
        string name;
        string unaligned;