minor changes to pcr.seqs. Added filterToPos and filterFromPos to sequence class...

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index af0cba814baece3ae9ce4abae02b3fa7370769cf..0a62e0c1ff6b60f20d58ed260847fb39eec44659 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -52,6 +52,8 @@ public:
        int getEndPos();
        void padToPos(int);
        void padFromPos(int);
+    int filterToPos(int); //any character before the pos is changed to . and aligned and unaligned strings changed
+    int filterFromPos(int); //any character after the pos is changed to . and aligned and unaligned strings changed
        int getAlignLength();
        int getAmbigBases();
        void removeAmbigBases();