paralellized unifrac.weighted for windows. added get.metacommunity command. fixed...

[mothur.git] / sequence.cpp

diff --git a/sequence.cpp b/sequence.cpp
index d1cf7299a46c522255eb725dccb058673f6b1c78..ddc7d4c5a410ca99a415ee1e15d7c60b2199060f 100644 (file)
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -683,12 +683,12 @@ int Sequence::filterToPos(int start){
     
     if (start > aligned.length()) { start = aligned.length(); m->mothurOut("[ERROR]: start to large.\n"); }
     
-       for(int j = 0; j < start-1; j++) {
+       for(int j = 0; j < start; j++) {
                aligned[j] = '.';
        }
        
     //things like ......----------AT become ................AT
-    for(int j = start-1; j < aligned.length(); j++) {
+    for(int j = start; j < aligned.length(); j++) {
         if (isalpha(aligned[j])) { break; }
         else { aligned[j] = '.'; }
     }