continued work on chimeras and fixed bug in trim.seqs and reverse.seqs that was due...

[mothur.git] / sequence.cpp

diff --git a/sequence.cpp b/sequence.cpp
index 10a964848bd24f81a2f7658b0f1711427fbe3897..b2c2b53d0b4078e6e296312662dcdfe0ffe5fbec 100644 (file)
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -291,6 +291,7 @@ void Sequence::reverseComplement(){
                else                                            {       temp += 'N';    }
        }
        unaligned = temp;
+       aligned = temp;
        
 }