Fixed a bug in the count output of seq.error when using multiple processors

[mothur.git] / sequence.cpp

diff --git a/sequence.cpp b/sequence.cpp
index 224ecb10cb1529db7d6bdb10c268be047dae5834..4c631a23451d4d9723aec3a29bed423737b243ba 100644 (file)
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -772,6 +772,8 @@ void Sequence::trim(int length){
        if(numBases > length){
                unaligned = unaligned.substr(0,length);
                numBases = length;
+        aligned = "";
+        isAligned = 0;
        }
        
 }