broke up globaldata and moved error checking and help into commands

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index 01dd450194c2f454ddd1b6c44de3fda99cde0798..03ec3e0c101cb2a83f3d38bfd21ce75d044f3fc4 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -18,12 +18,19 @@
 
 class SeqSummaryCommand : public Command {
 public:
-       SeqSummaryCommand();
+       SeqSummaryCommand(string);
        ~SeqSummaryCommand();
        int execute();
+       void help();
        
 private:
        GlobalData* globaldata; 
+       OptionParser* parser;
+       map<string, string> parameters;
+       map<string, string>::iterator it;
+       bool abort;
+       string fastafile;
+
 
 };