added namefile to summary.seqs

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index 305c6e34dd0fcf1a66e434b797ea3a5af991dfd0..fb24141f08a1314a386bc58899ec57ecf6c56e56 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -27,10 +27,11 @@ public:
        
 private:
        bool abort;
-       string fastafile, outputDir;
+       string fastafile, outputDir, namefile;
        int processors;
        vector<string> outputNames;
        map<string, vector<string> > outputTypes;
+       map<string, int> nameMap;
        
        struct linePair {
                unsigned long int start;
@@ -43,6 +44,7 @@ private:
        
        int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string);
        int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);       
+       int readNames();
 
        #ifdef USE_MPI
        int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long int>&);