modifications to commands to add headers to list file.

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index e6b037b6bcafafa6c7ccf5aafa9731de3d7ba864..e941b3a9a2ff500dd07e221712757a8b899526d2 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -203,7 +203,7 @@ int SeqSummaryCommand::execute(){
                if (namefile != "") { nameMap = m->readNames(namefile); }
         else if (countfile != "") {
             CountTable ct;
-            ct.readTable(countfile, false);
+            ct.readTable(countfile, false, false);
             nameMap = ct.getNameMap();
         }
                
@@ -376,7 +376,7 @@ int SeqSummaryCommand::execute(){
                 
         double meanstartPosition, meanendPosition, meanseqLength, meanambigBases, meanlongHomoPolymer;
                 
-               meanstartPosition /= (double) size; meanendPosition /= (double) size; meanlongHomoPolymer /= (double) size; meanseqLength /= (double) size; meanambigBases /= (double) size;
+               meanstartPosition = meanStartPosition / (double) size; meanendPosition = meanEndPosition /(double) size; meanlongHomoPolymer = meanLongHomoPolymer / (double) size; meanseqLength = meanSeqLength / (double) size; meanambigBases = meanAmbigBases /(double) size;
                                
                int ptile0_25   = int(size * 0.025);
                int ptile25             = int(size * 0.250);