added method parameter to get.oturep. options method=abundance or distance. default...

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index fdf95ee6fc5f87ed7629de936f4b0543dc89906a..e9002bd7c12781eb6fd2fdb284da2ea06e65c4fa 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -415,6 +415,13 @@ int SeqSummaryCommand::execute(){
                        }
                #endif
 
+        //set fasta file as new current fastafile
+               string current = "";
+               itTypes = outputTypes.find("summary");
+               if (itTypes != outputTypes.end()) {
+                       if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSummaryFile(current); }
+               }
+        
                return 0;
        }
        catch(exception& e) {