some bug fixes

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index 66405394859d182134884e4141b53d377c7ae245..5009ff5c2eeb87e1cbe49fdd0f240355bfcaaf74 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -27,7 +27,7 @@ SeqSummaryCommand::SeqSummaryCommand(string option)  {
                        OptionParser parser(option);
                        map<string,string> parameters = parser.getParameters();
                        
-                       ValidParameters validParameter;
+                       ValidParameters validParameter("summary.seqs");
                        map<string,string>::iterator it;
                        
                        //check to make sure all parameters are valid for command
@@ -113,7 +113,7 @@ int SeqSummaryCommand::execute(){
                                int tag = 2001;
                                int startTag = 1; int endTag = 2; int lengthTag = 3; int baseTag = 4; int lhomoTag = 5;
                                int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; 
-                               vector<long> MPIPos;
+                               vector<unsigned long int> MPIPos;
                                
                                MPI_Status status; 
                                MPI_Status statusOut;
@@ -360,7 +360,7 @@ int SeqSummaryCommand::driverCreateSummary(vector<int>& startPosition, vector<in
 }
 #ifdef USE_MPI
 /**************************************************************************************/
-int SeqSummaryCommand::MPICreateSummary(int start, int num, vector<int>& startPosition, vector<int>& endPosition, vector<int>& seqLength, vector<int>& ambigBases, vector<int>& longHomoPolymer, MPI_File& inMPI, MPI_File& outMPI, vector<long>& MPIPos) {    
+int SeqSummaryCommand::MPICreateSummary(int start, int num, vector<int>& startPosition, vector<int>& endPosition, vector<int>& seqLength, vector<int>& ambigBases, vector<int>& longHomoPolymer, MPI_File& inMPI, MPI_File& outMPI, vector<unsigned long int>& MPIPos) {       
        try {
                
                int pid;