changes while testing

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index 90a66f8f633212cf69a2930914a1911c5bca1cb1..27bb8d95190fb66ea03510cf266d2d53824d988c 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -203,7 +203,7 @@ int SeqSummaryCommand::execute(){
                if (namefile != "") { nameMap = m->readNames(namefile); }
         else if (countfile != "") {
             CountTable ct;
-            ct.readTable(countfile);
+            ct.readTable(countfile, false);
             nameMap = ct.getNameMap();
         }
                
@@ -494,13 +494,8 @@ int SeqSummaryCommand::driverCreateSummary(vector<int>& startPosition, vector<in
                        #else
                                if (in.eof()) { break; }
                        #endif
-                       
-                       //report progress
-                       //if((count) % 100 == 0){       m->mothurOut(toString(count)); m->mothurOutEndLine();           }
                }
-               //report progress
-               //if((count) % 100 != 0){       m->mothurOut(toString(count)); m->mothurOutEndLine();           }
-               
+                               
                in.close();
                
                return count;