paralellized unifrac.weighted for windows. added get.metacommunity command. fixed...

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index e9002bd7c12781eb6fd2fdb284da2ea06e65c4fa..90a66f8f633212cf69a2930914a1911c5bca1cb1 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -452,11 +452,15 @@ int SeqSummaryCommand::driverCreateSummary(vector<int>& startPosition, vector<in
                while (!done) {
                                
                        if (m->control_pressed) { in.close(); outSummary.close(); return 1; }
-                                       
+            
+            if (m->debug) { m->mothurOut("[DEBUG]: count = " + toString(count) + "\n");  }
+            
                        Sequence current(in); m->gobble(in);
            
                        if (current.getName() != "") {
                                
+                if (m->debug) { m->mothurOut("[DEBUG]: " + current.getName() + '\t' + toString(current.getNumBases()) + "\n");  }
+                
                                int num = 1;
                                if ((namefile != "") || (countfile != "")) {
                                        //make sure this sequence is in the namefile, else error 
@@ -480,6 +484,8 @@ int SeqSummaryCommand::driverCreateSummary(vector<int>& startPosition, vector<in
                                outSummary << current.getStartPos() << '\t' << current.getEndPos() << '\t';
                                outSummary << current.getNumBases() << '\t' << current.getAmbigBases() << '\t';
                                outSummary << current.getLongHomoPolymer() << '\t' << num << endl;
+                
+                if (m->debug) { m->mothurOut("[DEBUG]: " + current.getName() + '\t' + toString(current.getNumBases()) + "\n");  }
                        }
                        
                        #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)