more changes to error.seqs command and quality scores classses

[mothur.git] / seqerrorcommand.h

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index a012d68e614e82c18a59fe79c115e213a614d35b..e8ca96a6328ee56cf56ff1e9a1869107b359896f 100644 (file)
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -68,6 +68,8 @@ private:
        map<string, vector<string> > outputTypes;
        
        vector<Sequence> referenceSeqs;
+       vector<vector<int> > substitutionMatrix;
+       int a,t,g,c,gap,n;
 };
 
 #endif