changes while testing

[mothur.git] / seqerrorcommand.h

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index 9f400b328c93aa8d03bd176283b3df17974dc0f4..aac17b6979910ebc733be840eb37ec720ecc1105 100644 (file)
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -13,6 +13,7 @@
 #include "command.hpp"
 #include "sequence.hpp"
 #include "referencedb.h"
+#include "counttable.h"
 
 
 class SeqErrorCommand : public Command {
@@ -90,7 +91,7 @@ private:
        int driver(string, string, string, string, string, string, linePair, linePair, linePair);
        int createProcesses(string, string, string, string, string, string);
 
-       string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir;
+       string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir, countfile;
        double threshold;
        bool ignoreChimeras, save, aligned;
        int numRefs, processors;