added getCommandInfoCommand for gui

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index f0ff08691899d6f83c852aca4ee94bf0111fd1ee..b4259bfddfa565d1a6982e6583009c3690c90089 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -41,7 +41,7 @@ string SeqErrorCommand::getHelpString(){
                helpString += "The seq.error command reads a query alignment file and a reference alignment file and creates .....\n";
                helpString += "Example seq.error(...).\n";
                helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
-               helpString += "For more details please check out the wiki http://www.mothur.org/wiki/seq.error .\n\n";
+               helpString += "For more details please check out the wiki http://www.mothur.org/wiki/seq.error .\n";
                return helpString;
        }
        catch(exception& e) {
@@ -374,7 +374,7 @@ int SeqErrorCommand::execute(){
                ofstream errorCountFile;
                m->openOutputFile(errorCountFileName, errorCountFile);
                outputNames.push_back(errorCountFileName);  outputTypes["error.count"].push_back(errorCountFileName);
-               m->mothurOut("Overall error rate:\t" + toString((double)(totalBases - totalMatches) / (double)totalBases) + "\n\n");
+               m->mothurOut("Overall error rate:\t" + toString((double)(totalBases - totalMatches) / (double)totalBases) + "\n");
                m->mothurOut("Errors\tSequences\n");
                errorCountFile << "Errors\tSequences\n";                
                for(int i=0;i<misMatchCounts.size();i++){