some changes to trim.flows

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 18b0b72f9ae536e01c889315d2d753b421ee6bb0..9a2851e343c2a151811770d32c1a71f75092c231 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -15,7 +15,7 @@
 //**********************************************************************************************************************
 vector<string> SeqErrorCommand::getValidParameters(){  
        try {
-               string Array[] =  {"query", "reference", "name", "qfile", "report", "threshold", "inputdir", "outputdir"};
+               string Array[] =  {"query", "reference", "name", "qfile", "report", "threshold", "ignorechimeras", "inputdir", "outputdir"};
                vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
                return myArray;
        }