mods to shhhercommand and seqerrorcommand

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 00f78626b6270455f5a8f35464923fe72e9ff527..88794788a0472743665838721bb28b9b761f1765 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -505,7 +505,7 @@ Compare SeqErrorCommand::getErrors(Sequence query, Sequence reference){
                                if(started == 1){       break;  }
                        }
                        else if(q[i] != '.' && r[i] == '.'){            //      query extends beyond reference
-                               m->mothurOut("Warning: " + toString(query.getName()) + " extend beyond " + toString(reference.getName()) + ".  Ignoring the extra bases in the query\n");
+//                             m->mothurOut("Warning: " + toString(query.getName()) + " extend beyond " + toString(reference.getName()) + ".  Ignoring the extra bases in the query\n");
                                if(started == 1){       break;  }
                        }
                        else if(q[i] == '.' && r[i] == '.'){            //      both are missing data