fixes while testing

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 1f880f38cdf5c48d4dd0418c1d9c68172af7b8b7..0da4d1cd76cd51864c5442777180043f3c699fa2 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -24,6 +24,7 @@ vector<string> SeqErrorCommand::getValidParameters(){
 //**********************************************************************************************************************
 SeqErrorCommand::SeqErrorCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["error"] = tempOutNames;