changes while testing 1.26

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 8fd6368154773bcc38e2b950d7b170c88be2186e..9a7b814873f53239e734aee7733af51cf49dab6d 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -782,7 +782,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
                                if (queryFile.eof()) { break; }
                        #endif
                        
-                       if(index % 100 == 0){   m->mothurOut(toString(index) + '\n');   }
+                       if(index % 100 == 0){   m->mothurOut(toString(index));  m->mothurOutEndLine(); }
                }
                queryFile.close();
                if(qFileName != "" && rFileName != ""){  reportFile.close(); qualFile.close(); }
@@ -790,7 +790,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
                errorSeqFile.close();
                
                //report progress
-               if(index % 100 != 0){   m->mothurOut(toString(index) + '\n');   }
+               if(index % 100 != 0){   m->mothurOut(toString(index));  m->mothurOutEndLine(); }
                
                return index;
        }