working on pam

[mothur.git] / sensspeccommand.h

diff --git a/sensspeccommand.h b/sensspeccommand.h
index 73b74e3983a9b1e4078a5ee55e5ae975fd40f944..bfa329131f341e6a0750a318cc237ead77bbd8a4 100644 (file)
--- a/sensspeccommand.h
+++ b/sensspeccommand.h
@@ -48,7 +48,7 @@ private:
        set<string> labels; //holds labels to be used
 
        long int truePositives, falsePositives, trueNegatives, falseNegatives;
-       bool abort, allLines;
+       bool abort, allLines, square;
        bool hard;
        //string lineLabel;
        double cutoff;
@@ -58,6 +58,8 @@ private:
        int fillSeqPairSet(set<string>&, ListVector*&);
        int process(map<string, int>&, string, bool&, string&);
        int process(set<string>&, string, bool&, string&, int);
+    string preProcessList();
+    bool testFile();
 
 };