added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / sensspeccommand.cpp

diff --git a/sensspeccommand.cpp b/sensspeccommand.cpp
index 55d90bdd2ce1debc857ddb33a47969e0c3f66933..cfa1f5b6dc0649925ff4762abdef070e93fd7688 100644 (file)
--- a/sensspeccommand.cpp
+++ b/sensspeccommand.cpp
@@ -45,6 +45,26 @@ string SensSpecCommand::getHelpString(){
        }
 }
 //**********************************************************************************************************************
+string SensSpecCommand::getOutputFileNameTag(string type, string inputName=""){        
+       try {
+        string outputFileName = "";
+               map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "sensspec")            {   outputFileName =  "sensspec";   }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return outputFileName;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "SensSpecCommand", "getOutputFileNameTag");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
 SensSpecCommand::SensSpecCommand(){    
        try {
                abort = true; calledHelp = true; 
@@ -197,7 +217,7 @@ SensSpecCommand::SensSpecCommand(string option)  {
                                else { allLines = 1;  }
                        }
                        
-                       sensSpecFileName = outputDir + m->getRootName(m->getSimpleName(listFile)) + "sensspec";
+                       sensSpecFileName = outputDir + m->getRootName(m->getSimpleName(listFile)) + getOutputFileNameTag("sensspec");
                }
        }
        catch(exception& e) {