added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / secondarystructurecommand.h

diff --git a/secondarystructurecommand.h b/secondarystructurecommand.h
index 110f019f3beeafdd2a877c423b250232a488e62c..becafc5bb3f29073d0e72859e495f0364c351dfb 100644 (file)
--- a/secondarystructurecommand.h
+++ b/secondarystructurecommand.h
@@ -50,7 +50,7 @@ class AlignCheckCommand : public Command {
        
        private:
                vector<int> structMap;
-               string mapfile, fastafile, outputDir, namefile;
+               string mapfile, fastafile, outputDir, namefile, countfile;
                bool abort;
                int seqLength, haderror;
                vector<string> outputNames;