fixed bugs for 1.8

[mothur.git] / secondarystructurecommand.h

diff --git a/secondarystructurecommand.h b/secondarystructurecommand.h
index dffb4cbd980ff504307465ae64a0f6645fe5e6a5..2e6191ca67f47f92f38bb8c030a8ad3e32920af6 100644 (file)
--- a/secondarystructurecommand.h
+++ b/secondarystructurecommand.h
@@ -41,7 +41,7 @@ class AlignCheckCommand : public Command {
                vector<int> structMap;
                string mapfile, fastafile, outputDir;
                bool abort;
-               int seqLength;
+               int seqLength, haderror;
                
                void readMap();
                statData getStats(string sequence);