added count file to get.oturep, pre.cluster, screen.seqs, tree.shared. made remove...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 771113da1bda0ee34859faaa39b2fe7be1bc2672..b0d7c7c18f3852dd40395b0f699749fc885cc14b 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -44,6 +44,7 @@ private:
 
        int screenNameGroupFile(set<string>);
        int screenGroupFile(set<string>);
+    int screenCountFile(set<string>);
        int screenAlignReport(set<string>);
        int screenQual(set<string>);
        int screenTaxonomy(set<string>);
@@ -56,7 +57,7 @@ private:
        #endif
 
        bool abort;
-       string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy;
+       string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy, countfile;
        int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
        vector<string> outputNames;
        vector<string> optimize;