added current as option is lists of file names, processors now outputted with current...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index b8ab242e187b2f1b0fccc8b087e7c17f2cc0c903..602326c42e2ff75afbeb8050479cf7e188b8b634 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -42,6 +42,7 @@ private:
        int screenNameGroupFile(set<string>);
        int screenGroupFile(set<string>);
        int screenAlignReport(set<string>);
+       int screenQual(set<string>);
        
        int driver(linePair*, string, string, string, set<string>&);
        int createProcesses(string, string, string, set<string>&);
@@ -51,7 +52,7 @@ private:
        #endif
 
        bool abort;
-       string fastafile, namefile, groupfile, alignreport, outputDir;
+       string fastafile, namefile, groupfile, alignreport, outputDir, qualfile;
        int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
        vector<string> outputNames;
        vector<string> optimize;