finished shhh.seqs command, fixed bug with remove.groups and get.groups that caused...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 87c8beef870b82a95f79bfddcdacba8ab2a1d47e..49d992ac193c7aa42ad4492c9190bda40671fc0b 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -45,6 +45,7 @@ private:
        int screenGroupFile(set<string>);
        int screenAlignReport(set<string>);
        int screenQual(set<string>);
+       int screenTaxonomy(set<string>);
        
        int driver(linePair*, string, string, string, set<string>&);
        int createProcesses(string, string, string, set<string>&);
@@ -54,7 +55,7 @@ private:
        #endif
 
        bool abort;
-       string fastafile, namefile, groupfile, alignreport, outputDir, qualfile;
+       string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy;
        int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
        vector<string> outputNames;
        vector<string> optimize;