fixes while testing 1.33.0

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index e2906900980ac7d1897b9e0976435401fb35c8be..18a55ac1b584dc0bce91c4f0f950d164e03fb983 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -74,8 +74,8 @@ private:
 
        bool abort;
        string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy, countfile, contigsreport, summaryfile;
-       int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria, minOverlap, oStart, oEnd, mismatches, maxN, maxInsert;
-    float minSim, minScore;
+       int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, minOverlap, oStart, oEnd, mismatches, maxN, maxInsert;
+    float minSim, minScore, criteria;
        vector<string> outputNames;
        vector<string> optimize;
        map<string, int> nameMap;
@@ -449,10 +449,10 @@ static DWORD WINAPI MySumScreenThreadFunction(LPVOID lpParam){
     
                        }               
             //report progress
-                       if((i+1) % 100 == 0){   pDataArray->m->mothurOut("Processing sequence: " + toString(i+1)); pDataArray->m->mothurOutEndLine();           }
+                       if((i+1) % 100 == 0){   pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(i+1)+"\n");             }
                }
                //report progress
-               if((pDataArray->count) % 100 != 0){     pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();             }
+               if((pDataArray->count) % 100 != 0){     pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n");               }