added namefile to align.check and added seqs from namefile to optimizing piece of...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 81b915efcbf97e4b91bfca3bf27353da8f9ea8e9..45c9db5de13690840b5eede966c568aeda9a067e 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -53,6 +53,8 @@ private:
        vector<string> outputNames;
        vector<string> optimize;
        map<string, vector<string> > outputTypes;
+       map<string, int> nameMap;
+       int readNames();
        
        int getSummary(vector<unsigned long int>&);
        int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string);