metastats in progress

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 9a6998e28fdb7f41a8c7be6b00b86a7f0c5be8ee..ec2d8e003a31a712de8c32d255d164b6b13cd46c 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -283,10 +283,15 @@ int ScreenSeqsCommand::execute(){
                        getSummary(positions); 
                } 
                else { 
+                       #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
                        positions = m->divideFile(fastafile, processors);
                        for (int i = 0; i < (positions.size()-1); i++) {
                                lines.push_back(new linePair(positions[i], positions[(i+1)]));
-                       }       
+                       }
+                       #else 
+                               positions.push_back(0); positions.push_back(1000);
+                               lines.push_back(new linePair(0, 1000));
+                       #endif
                }
                                
                string goodSeqFile = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "good" + m->getExtension(fastafile);
@@ -659,12 +664,15 @@ int ScreenSeqsCommand::getSummary(vector<unsigned long long>& positions){
                vector<int> ambigBases;
                vector<int> longHomoPolymer;
                
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
                vector<unsigned long long> positions = m->divideFile(fastafile, processors);
-                               
+               
                for (int i = 0; i < (positions.size()-1); i++) {
                        lines.push_back(new linePair(positions[i], positions[(i+1)]));
                }       
-               
+#else
+               lines.push_back(new linePair(0, 1000));
+#endif
                
 #ifdef USE_MPI
                int pid;
@@ -778,7 +786,7 @@ int ScreenSeqsCommand::driverCreateSummary(vector<int>& startPosition, vector<in
                                
                                count++;
                        }
-                       
+                       //if((count) % 100 == 0){       m->mothurOut("Optimizing sequence: " + toString(count)); m->mothurOutEndLine();         }
                        #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
                                unsigned long long pos = in.tellg();
                                if ((pos == -1) || (pos >= filePos->end)) { break; }