added binary file operations to mothurout class. added comment to sequence class...

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index a56b0ebb73d1f6188ecd09430e70ed0128abaf31..bf702e13534f507576bee7c24bcf6462aacb7ca3 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -2119,7 +2119,7 @@ int ScreenSeqsCommand::screenGroupFile(map<string, string> badSeqNames){
                while(!inputGroups.eof()){
                        if (m->control_pressed) { goodGroupOut.close(); inputGroups.close(); m->mothurRemove(goodGroupFile); return 0; }
 
-                       inputGroups >> seqName; m->gobble(inputGroups); inputGroups >> group;
+                       inputGroups >> seqName; m->gobble(inputGroups); inputGroups >> group; m->gobble(inputGroups);
                        it = badSeqNames.find(seqName);
                        
                        if(it != badSeqNames.end()){
@@ -2128,7 +2128,6 @@ int ScreenSeqsCommand::screenGroupFile(map<string, string> badSeqNames){
                        else{
                                goodGroupOut << seqName << '\t' << group << endl;
                        }
-                       m->gobble(inputGroups);
                }
                
                if (m->control_pressed) { goodGroupOut.close();  inputGroups.close(); m->mothurRemove(goodGroupFile);  return 0; }