some bug fixes

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 09b82cebe3138f44533aa477b0d24fa9165c0e08..b2fdaff640557e7f9b840748db2afbde438bf5e5 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -28,7 +28,7 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option)  {
                        OptionParser parser(option);
                        map<string,string> parameters = parser.getParameters();
                        
-                       ValidParameters validParameter;
+                       ValidParameters validParameter("screen.seqs");
                        map<string,string>::iterator it;
                        
                        //check to make sure all parameters are valid for command
@@ -179,7 +179,7 @@ int ScreenSeqsCommand::execute(){
 #ifdef USE_MPI 
                        int pid, end, numSeqsPerProcessor; 
                        int tag = 2001;
-                       vector<long> MPIPos;
+                       vector<unsigned long int> MPIPos;
                        
                        MPI_Status status; 
                        MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
@@ -749,7 +749,7 @@ int ScreenSeqsCommand::driver(linePair* line, string goodFName, string badFName,
 }
 //**********************************************************************************************************************
 #ifdef USE_MPI
-int ScreenSeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& goodFile, MPI_File& badFile, MPI_File& badAccnosFile, vector<long>& MPIPos, set<string>& badSeqNames){
+int ScreenSeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& goodFile, MPI_File& badFile, MPI_File& badAccnosFile, vector<unsigned long int>& MPIPos, set<string>& badSeqNames){
        try {
                string outputString = "";
                MPI_Status statusGood;