sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 29e541319081d5bbd2254923919a03b255a00ca7..033fbcad422abb62cd2470866bd4666db9e907bd 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -2301,7 +2301,7 @@ int ScreenSeqsCommand::screenQual(map<string, string> badSeqNames){
                                saveName = name.substr(1);
                                while (!in.eof())       {       
                                        char c = in.get(); 
-                                       if (c == 10 || c == 13){        break;  }
+                                       if (c == 10 || c == 13 || c == -1){     break;  }
                                        else { name += c; }     
                                } 
                                m->gobble(in);