added the Calculators Thomas made in the fall. Added parameter and command error...

[mothur.git] / sabundvector.hpp

diff --git a/sabundvector.hpp b/sabundvector.hpp
index 3c68462a425b5f1710f679c4272c4b5e6e6c7877..bd657aa20d41f3f1ae3d9f757ebd87c04de36270 100644 (file)
--- a/sabundvector.hpp
+++ b/sabundvector.hpp
@@ -6,6 +6,7 @@ using namespace std;
 #include "datavector.hpp"
 #include "rabundvector.hpp"
 #include "ordervector.hpp"
+#include "calculator.h"
 
 
 /* This class is a child to datavector.  It represents OTU information at a certain distance. 
@@ -24,6 +25,7 @@ public:
        SAbundVector();
        SAbundVector(int);
 //     SAbundVector(const SAbundVector&);
+       SAbundVector(vector<int>, int, int, int);
        SAbundVector(string, vector<int>);
        SAbundVector(const SAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
        SAbundVector(ifstream&);
@@ -36,13 +38,15 @@ public:
        void set(int, int);
        int get(int);
        void push_back(int);
+       void quicksort();
+       int sum();
        void resize(int);
        int size();
 
        void print(ostream&);
        void print(string, ostream&);
                
-       RAbundVector getRAbundVector(); 
+       RAbundVector getRAbundVector();         
        SAbundVector getSAbundVector();
        OrderVector getOrderVector(map<string,int>*);
        
@@ -50,6 +54,7 @@ private:
        vector<int> data;
 //     bool needToUpdate;
 //     void updateStats();
+       
        int maxRank;
        int numBins;
        int numSeqs;