moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / sabundvector.hpp

diff --git a/sabundvector.hpp b/sabundvector.hpp
deleted file mode 100644 (file)
index 666e94f..0000000
--- a/sabundvector.hpp
+++ /dev/null
@@ -1,64 +0,0 @@
-#ifndef SABUND_H
-#define SABUND_H
-
-#include "datavector.hpp"
-#include "rabundvector.hpp"
-#include "ordervector.hpp"
-#include "calculator.h"
-
-
-/*  Data Structure for a sabund file.
-    This class is a child to datavector.  It represents OTU information at a certain distance. 
-       A sabundvector can be converted into and ordervector, listvector or rabundvector.
-       Each member of the internal container "data" represents the number of OTU's with that many members, but staring at 1.
-       So data[1] = 2, because there are two OTUs with 1 member.
-       example: listvector             =       a,b,c,d,e,f             g,h,i           j,k             l               m  
-                        rabundvector   =       6                               3                       2               1               1
-                        sabundvector   =       2               1               1               0               0               1
-                        ordervector    =       1       1       1       1       1       1       2       2       2       3       3       4       5 */
-
-
-class SAbundVector : public DataVector {
-       
-public:
-       SAbundVector();
-       SAbundVector(int);
-//     SAbundVector(const SAbundVector&);
-       SAbundVector(vector<int>, int, int, int);
-       SAbundVector(string, vector<int>);
-       SAbundVector(const SAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
-       SAbundVector(ifstream&);
-       ~SAbundVector(){};
-
-       int getNumBins();       
-       int getNumSeqs();       
-       int getMaxRank();       
-       
-       void set(int, int);
-       int get(int);
-       void push_back(int);
-       void quicksort();
-       int sum();
-       void resize(int);
-       int size();
-       void clear();
-
-       void print(ostream&);
-       void print(string, ostream&);
-               
-       RAbundVector getRAbundVector();         
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       
-private:
-       vector<int> data;
-//     bool needToUpdate;
-//     void updateStats();
-       
-       int maxRank;
-       int numBins;
-       int numSeqs;
-
-};
-
-#endif