changed random forest output filename

[mothur.git] / reversecommand.h

diff --git a/reversecommand.h b/reversecommand.h
index 8b5bcd262528e36f756093a8236f8a1b3a447ce8..f7f729c9848ae0fa972944ae5b51ec18cceaca1d 100644 (file)
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -16,20 +16,26 @@ class ReverseSeqsCommand : public Command {
 public:
        ReverseSeqsCommand(string);
        ReverseSeqsCommand();
-       ~ReverseSeqsCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help();
+       ~ReverseSeqsCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "reverse.seqs";                        }
+       string getCommandCategory()             { return "Sequence Processing";         }
+       
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
+       string getDescription()         { return "outputs a fasta file containing the reverse-complements"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
 private:
 
        bool abort;
-       string fasta, outputDir;
+       string fastaFileName, qualFileName, outputDir;
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
        
 };