changed random forest output filename

[mothur.git] / reversecommand.h

diff --git a/reversecommand.h b/reversecommand.h
index 46211a5e008d9194d8c18cdaed0bbeed04afb4e5..f7f729c9848ae0fa972944ae5b51ec18cceaca1d 100644 (file)
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -10,18 +10,32 @@
  *
  */
 
-#include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
 
 class ReverseSeqsCommand : public Command {
 public:
+       ReverseSeqsCommand(string);
        ReverseSeqsCommand();
-       ~ReverseSeqsCommand();
-       int execute();
+       ~ReverseSeqsCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "reverse.seqs";                        }
+       string getCommandCategory()             { return "Sequence Processing";         }
+       
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
+       string getDescription()         { return "outputs a fasta file containing the reverse-complements"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
 private:
-       GlobalData* globaldata; 
+
+       bool abort;
+       string fastaFileName, qualFileName, outputDir;
+       vector<string> outputNames;
        
 };