broke up globaldata and moved error checking and help into commands

[mothur.git] / reversecommand.h

diff --git a/reversecommand.h b/reversecommand.h
index 46211a5e008d9194d8c18cdaed0bbeed04afb4e5..2a996e9fe02d6e05511ea543ef0d9dd4e507fbdb 100644 (file)
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -16,12 +16,19 @@
 
 class ReverseSeqsCommand : public Command {
 public:
-       ReverseSeqsCommand();
+       ReverseSeqsCommand(string);
        ~ReverseSeqsCommand();
        int execute();
+       void help();
        
 private:
        GlobalData* globaldata; 
+       OptionParser* parser;
+       map<string, string> parameters;
+       map<string, string>::iterator it;
+       bool abort;
+       string fasta;
+
        
 };