]> git.donarmstrong.com Git - mothur.git/blobdiff - reversecommand.h
removed read.dist, read.otu, read.tree and globaldata. added current to defaults...
[mothur.git] / reversecommand.h
index bd8d1194ff095fa5fecff1b51570520b849dbf9a..0d1da8801adc5a2b5e5bfe9cf81ef58789de534c 100644 (file)
@@ -16,20 +16,21 @@ class ReverseSeqsCommand : public Command {
 public:
        ReverseSeqsCommand(string);
        ReverseSeqsCommand();
-       ~ReverseSeqsCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help();
+       ~ReverseSeqsCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "reverse.seqs";                        }
+       string getCommandCategory()             { return "Sequence Processing";         }
+       string getHelpString(); 
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
 private:
 
        bool abort;
        string fastaFileName, qualFileName, outputDir;
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
        
 };