moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / reportfile.h

diff --git a/reportfile.h b/reportfile.h
deleted file mode 100644 (file)
index 067dd14..0000000
--- a/reportfile.h
+++ /dev/null
@@ -1,55 +0,0 @@
-#ifndef REPORTFILE
-#define REPORTFILE
-
-/*
- *  reportfile.h
- *  Mothur
- *
- *  Created by Pat Schloss on 7/12/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-
-/**************************************************************************************************/
-
-class ReportFile {
-public:
-       ReportFile();
-       ReportFile(ifstream&);
-       ReportFile(ifstream&, string);
-       
-       string getQueryName()                           {       return queryName;                               }
-       string getTemplateName()                        {       return templateName;                    }
-       string getSearchMethod()                        {       return searchMethod;                    }
-       string getAlignmentMethod()                     {       return alignmentMethod;                 }
-       
-       int getQueryLength()                            {       return queryLength;                             }
-       int getTemplateLength()                         {       return templateLength;                  }
-       int getQueryStart()                                     {       return queryStart;                              }
-       int getQueryEnd()                                       {       return queryEnd;                                }
-       int getTemplateStart()                          {       return templateStart;                   }
-       int getTemplateEnd()                            {       return templateEnd;                             }
-       int getPairwiseAlignmentLength()        {       return pairwiseAlignmentLength; }
-       int getGapsInQuery()                            {       return gapsInQuery;                             }
-       int getGapsInTemplate()                         {       return gapsInTemplate;                  }
-       int getLongestInsert()                          {       return longestInsert;                   }
-       
-       float getSearchScore()                          {       return searchScore;                             }
-       float getSimBtwnQueryAndTemplate()      {       return simBtwnQueryAndTemplate; }
-       
-
-private:
-       
-       MothurOut* m;
-               
-       string queryName, templateName, searchMethod, alignmentMethod, dummySearchScore;
-       int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
-       float searchScore, simBtwnQueryAndTemplate;
-       
-};
-
-/**************************************************************************************************/
-
-#endif